If you are looking to backup the entire site collection then I recommend using
the stsadm utility. Your command line should look something like this:
stsadm.exe -o backup -url http://servername/site -filename
c:\directory\filename.dat
To restore:
stsadm.exe -o restore -url http://servername/site -filename
c:\directory\filename.dat
If you only want to backup a site, then use:
stsadm.exe -o export -url http://servername/site -filename
c:\directory\filename.bak
To restore:
stsadm.exe -o import -url http://servername/site -filename
c:\directory\filename.bak